Environmental Uncultivable Bacteria Model for Understanding Human Periodontitis

San Jose State University, San Jose CA

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Abstract

DESCRIPTION (provided by applicant): It has been estimated that the human body harbors 10 times more bacterial cells than human cells; many of those bacteria are yet uncultured. Historically, cultivable bacteria have been instrumental in human development, health, and diseases. It is reasonable to speculate that uncultured bacterial groups, which comprise nearly 80% of the human gut and 68% of the human oral microbial consortia, participate in similar functions. TM7, one of many candidate divisions of Bacteria, is comprised entirely of uncultured members, and has been associated with the human body (skin, mouth, gut, and vaginal fluid). Recently TM7 were associated with human oral diseases. This year, as part of our first SC3 funding cycle, we identified and published an environmental source for a TM7 bacterium with >99% identity to a human-associated oral TM7, based on 16S ribosomal DNA gene (16S rDNA) sequence analysis (Dinis et al. 2011). Surprisingly, our environmental TM7 bacterium has higher sequence homology to the human oral-associated TM7 than most other TM7 bacteria found elsewhere in the human body and up to five times more abundant than TM7 in the human oral cavity. We hypothesize that environmental TM7 bacteria can serve as a model organism for understanding human diseases. In this renewal application, we propose to sequence and annotate the whole genome of the environmental TM7 model organism in our samples. A genome sequence can help us make predictions for putative function of genes to pathogenicity, metabolic pathways, nutrient requirements, motility capabilities, and other biological attributes o this potential emerging human pathogen.